Poggiale, J.-C., Kooi, B.W., Aldebert, C. and Girardot, B., Analysis of a predator–prey model with specific time scales: a geometrical approach proving the occurrence of canard solutions, J. Math. Biol. doi: 10.1007/s00285-019-01337-4 (pdf)
Poggiale, J.-C., Regime shifts at the origin of a long transient methodological development for predictive ecology, Physics of Life Reviews, doiS.
Augustine, S. Rosa, S.A.L.M. Kooijman, F. Carlotti, J.-C.
Poggiale, Modeling the eco-physiology of the purple mauve
stinger, Pelagia nocticula, using
Dynamic Energy Budget theory, Journal of
Sea Research, 94, 52-64 (pdf).
S. Augustine, C. Jaspers, S.A.L.M. Kooijman, F. Carlotti, J.-C. Poggiale, V. Freitas, H. van der Veer, L. van Walraven, Mechanisms behind the metabolic flexibility of an invasive comb jelly, Journal of Sea Research, 94, 156-165 (pdf).
Dugenne, M. Thyssen, D. Nérini, C. Manté, J.-C. Poggiale, N. Garcia, F. Garcia, G. Grégori, Consequence of a sudden wind event on the dynamics of a coastal phytoplankton community: an insight into specific population growth rates using a single cell high frequency approach, Frontiers in Microbiology, Vol. 5, Article 485, doi:10.3389/fmicb.2014.00485.F. Cordoleani, D. Nérini, A. Morozov, M. Gauduchon, J.-C. Poggiale, Scaling up the predator functional response in heterogeneous environment: when Holling type III can emerge? Journal of Theoretical Biology, 336, 200-208, (pdf).
J.-C. Poggiale, Y. Eynaud, M. Baklouti, Impact of periodic nutrient input rate on trophic chain properties, Ecological Complexity, Ecological Complexity, 56-63, (pdf).
M. Marva, R. Bravo de la Parra, J.-C. Poggiale, Reduction of slow-fast asymptotically autonomous systems with applications to gradostat models, Ecological Complexity, 14, 75-84, (pdf).
O. Maury, J.-C. Poggiale, From individuals to populations to communities: A dynamic energy budget model of marine ecosystem size-spectrum including life history diversity, Journal of Theoretical Biology, 324, 52-71 (pdf).
Y. Eynaud, D. Nérini, M. Baklouti, J.-C. Poggiale, Towards a simplification of models using regression trees, Journal of the Royal Society Interface, 10, 20120613, (pdf)
2012
A. Morozov, J.-C. Poggiale, F. Cordoleani, Implementation of the zooplankton functional response in plankton models: state of the art, recent challenges and future directions, Progress in Oceanography 103, 80-91 (pdf).
A. Morozov, J.-C. Poggiale, From spatially explicit ecological models to mean-field dynamics: The state of the art and perspectives, Ecological Complexity 10, 1-11 (pdf)
P. Auger, J.-C. Poggiale, E. Sanchez, A review on spatial aggregation methods involving several time scales, Ecological Complexity 10, 12-25 (pdf)
M. Marva, R. Bravo de la Parra, J.-C. Poggiale, Approximate aggregation of a two time scales periodic multi-strain SIS epidemic model: a patchy environment with fast migrations, Ecological Complexity 10, 34-41 (pdf)
Pischedda, P. Cuny, J.-L. Esteves, J.-C. Poggiale, F. Gilbert Spatial oxygen heterogeneity in a Hediste diversicolor irrigated burrow, Hydrobiologia, 680 (1), 109-124 (pdf)
2011The Mermex group, X. Durrieu de Madron, C. Guieu, R. Sempéré et al., (2011), Marine ecosystems’ responses to climatic and anthropogenic forcings in the Mediterranean, Progress in Oceanography, 91, 97-166 (pdf)
F. Cordoleani, D. Nérini, M. Gauduchon, A. Morozov, J.-C. Poggiale, (2011), Structural sensitivity of biological models revisited, Journal of Theoretical Biology, 283, 82-91 (pdf)
E. Sánchez, P. Auger, J.-C. Poggiale, Two-time scales in spatially structured models of population dynamics: A semigroup approach, Journal of Mathematical Analysis and Applications, 375, 149-165 (pdf).
2010
T. Souza, T. Domingos, J.-C. Poggiale and S.A.L.M., Kooijman, (2010), Dynamic energy budget theory restores coherence in biology, Philosophical Transactions of the Royal Society - B, Vol. 365, 3413-3428.
S.
Massarin, F. Alonzo, L. Garcia-Sanchez, R. Gilbin, J.
Garnier-Laplacec, J.-C. Poggiale,
(2010),
Effects of chronic uranium exposure on life history and physiology of
Daphnia magna over three successive generations, Aquatic Toxicology, Vol. 99 (3),
309-319 (pdf)
J.-C. Poggiale, M. Baklouti, B. Queguiner and S.A.L.M. Kooijman, (2010), How far details are important in ecosystem modelling: the case of multi-limiting nutrients in phytoplankton - zooplankton interactions, Philosophical Transactions of the Royal Society - B, Vol. 365, 3495-3507.
M. Eichinger, R. Sempéré, G. Grégori, B. Charrière, J. C. Poggiale and D. Lefèvre, (2010), Increased bacterial growth efficiency with environmental variability: results from DOC degradation by bacteria in pure culture experiments, Biogeosciences, Vol. 7 (6), 1861-1876 (pdf)
F. Carlotti, J.-C. Poggiale, (2010), Towards methodological approaches to implement the zooplankton component in ‘‘end to end” food-web models, Progress in Oceanography, Vol. 84, 20-38 (pdf)
2009
J.-C. Poggiale, P. Auger, F. Cordoléani, T. Nguyen-Huu, (2009), Study of a virus-bacteria interaction model in a chemostat: application of geometrical singular perturbation theory, Philosophical Transactions of the Royal Society - A, Vol. 367, 4685-4697
M. Eichinger, S.A.L.M. Kooijman, R. Sempéré, D. Lefèvre, G. Grégori, B. Charrière, J.-C. Poggiale, (2009), DOC consumption and release by marine bacteria in a pulsed-substrate environment: from experiments to modelling, Aquatic Microbial Ecology, Vol. 56, 41-54 (pdf)
2008
J.-C. Poggiale, M. Gauduchon and P. Auger, (2008), Enrichment Paradox Induced by Spatial Heterogeneity in a Phhytoplankton - Zooplankton System, Mathematical Models of Natural Phenomena, Vol. 3 (3), 87-102 (pdf)
F. Mermillod-Blondin, J.-C. Poggiale, C. Tolla, W. Thuillier, P. Auger and M. Creuzé des Châtelliers, (2008), Modelling the impact of tubicid worms (Oligochaeta) on oxygen concentrations in hyporheic sediments: importance of vertical distributions, Fundamentals and Applied Limnology, 172 (2): 135–145
P. Auger, R. Bravo de la Parra, J.-C. Poggiale, E. Sanchez, L. Sanz, (2008), Aggregation methods in dynamical systems and applications in population and community dynamics, Physics of Life Reviews, 5, 79-105 (pdf)
L. Pischedda, J.-C. Poggiale, P. Cuny, F. Gilbert, (2008), Imaging Oxygen Distribution in Marine Sediments. The Importance of Bioturbation and Sediment Heterogeneity, Actabiotheoretica, Vol. 56, 123-135 (pdf).F. Gilbert, S. Hulth, V.
Grossi, J.-C. Poggiale,
G. Desrosiers, R. Rosenberg, M. Gérino, F. François, E.
Michaud, G. Stora, (2007), Sediment reworking by marine benthic
species from
Gullmar Fjord
(Western Sweden): Importance of faunal biovolume,
J. Experimental Marine
Biology and Ecology, 348, 133-144, (pdf)
R. Mchich, P.Auger, J.-C.
Poggiale, (2007), Effect of predator density dependent dispersal of
prey on
stability of a predator-prey system, Mathematical Biosciences,
206, 343-356 (pdf).
E. Duport, F. Gilbert, J.-C. Poggiale, K. Dedieu and G. Stora, (2007), Benthic macrofauna and sediment reworking quantification in contrasted environment in the Thau Lagoon, Estuarine, Coastal and Shelf Science, 72, 522-533 (pdf)
C. Tolla, S. A. L. M.
Kooijman and J.-C. Poggiale, (2007), A kinetic inhibition
mechanism for maintenance
, Journal of Theoretical Biology, 244, (4), 576-587 (pdf).
2006
T. Nguyen-Huu, C. Lett, J.C. Poggiale and P. Auger, (2006), Effect of movement frequency on global host-parasitoid spatial dynamics with unstable local dynamics , Ecological Modelling,197, 290-295 (pdf).
T. Nguyen-Huu, C. Lett, P. Auger, J.-C.
Poggiale, (2006), Spatial synchrony of host-parasitoid models using
aggregation of
variables, Mathematical Biosciences, 203, 204-221 (pdf).
M. Eichinger, J.-C., Poggiale, F. Van
Wambeke, D. Lefèvre, R. Sempéré, (2006), Modelling
DOC assimilation and
bacterial growth efficiency in biodegradation experiments: a case study
in the
P. Auger, B.W.Kooi, R.
Bravo de
J.-C. Poggiale, P. Auger, D. Nérini, C. Manté,
F.
Gilbert, (2005), Global production increased by spatial heterogeneity
in a
population dynamics model, Actabiotheoretica, 53, 359-370, (pdf).
R. Bravo de la Parra, J.-C. Poggiale, (2005), Theoretical ecology and mathematical modelling: Problems and methods, Ecological Modelling, 188, (1), 1-2 (Editorial), (pdf).
J.-C. Poggiale , P. Auger, (2004), Impact of spatial heterogeneity on a predator–prey system dynamics, C. R. Biologies, 327, 1058–1063 (pdf).
D. Ouellette, G. Desrosiers,
J.-P. Gagné, F. Gilbert, J.-C. Poggiale,
G. Stora, P. Blier,
(2004),
Effect of temperature on the in vitro bioturbation
activities of the polychaete Nereis
virens (Sars),
Marine
Ecology - Progress Series, vol. 266, pp.185-193 (pdf).
2003
M. Gérino,
G. Stora, F. François-Carcaillet,
F. Gilbert, J.C. Poggiale, F. Mermillod-Blondin, G. Desrosiers,
P. Vervier, (2003), Macro-Invertebrate
functional
groups in freshwater and marine sediments : a common mechanistic
classification, Vie et Milieu, 53 (4), pp. 221-231.
F. Talin,
C. Tolla, C. Rabouille, J.C. Poggiale, (2003), Relations between
bacterial biomass
and carbon cycle in marine sediments : An early diagenetic
model, ActaBiotheoretica, Vol. 51,
4, pp. 295
- 315 (pdf).
S.A.L.M. Kooijman, P. Auger, J.C. Poggiale, B.W. Kooi,, (2003), Eight quantitative steps in the evolution of endosymbiosis and homeostasis, Biol. Review, vol. 78, pp. 435-463 (pdf).
F. Gilbert, S. Hulth,
N. Strömberg, Katja
Ringdahl, JC Poggiale,
(2003), 2-D optical quantification of particle reworking
activities in
marine surface sediments, J. Experimental Marine Biology and
Ecology,
4059, pp. 1-12 (pdf).
2002
B.W. Kooi,
J.C. Poggiale, P. Auger,
S.A.L.M Kooijman, (2002), Aggregation
methods in food chains with
nutrient recycling, Ecological modelling, Vol. 157, 1, pp 69
– 86, (pdf).
F.
François, M. Gérino,
G. Stora, J.P. Durbec,
J.C.
Poggiale (2002), A functional approach
of the
sediment reworking due to gallery digging macrobenthic
organisms : modelling and application with the polychaete
Nereis diversicolor,
Marine Ecology Progress Series, Vol. 229, pp. 127-136, (pdf).
2001
F. Gilbert, G. Stora, G. Desrosiers, B. Deflandre, J.C. Bertrand, J.C. Poggiale, J.P. Gagné, (2001), Alteration and release of aliphatic compounds by the polychaete Nereis virens (Sars) experimentally fed with hydrocarbons, J. Experimental Marine Biology and Ecology, Vol. 256, 2, pp. 199-231, (pdf).
J.C. Poggiale,
J.C. Dauvin,
(2001), Long term dynamics of three benthic Ampelisca
(Crustacea-Amphipoda) populations from the
Bay of Morlaix (western English Channel)
related to their disappearance
after the Amoco Cadiz oil spill, Marine Ecology Progress Series,
Vol.
214, P 201-209, (pdf).
2000
P. Auger, S. Charles, M. Viala,
J.C. Poggiale,
(2000), Aggregation and emergence in ecological modelling :
integration of the ecological levels, Ecological Modelling,
127, pp.
11-20, (pdf).
P.
Auger, J.C. Poggiale,
S. Charles, (2000), Emergence of Individual
Behaviour at the
population level : effects
of density dependent
migration on population dynamics, Compte
Rendus de
l'Académie des Sciences, Sciences de
1999
T.
Moutin, P. Raimbaut,
J.C Poggiale,
(1999),
Production primaire dans les eaux de surface de
P. Auger, G. Chiorino,
J.C. Poggiale, (1999), Aggregation,
emergence
and immergence in hierarchically organized systems, Int. J. General
Systems,
27 (4-5), pp. 349-371
C. Bernstein, P. Auger, J.C. Poggiale, (1999), Predator Migration
decisions, the
Ideal Free Distribution and predator-prey dynamics, American
Naturalist,
153 (3), pp. 267-281.
1998
F. François, J.C. Poggiale, J.P.
Durbec, G. Stora,
(1998), A new model of bioturbation for a functional approach to
sediment
reworking resulting from macrobenthic communities, Belle W. Baruch
Library in
Marine Science, Univ. South Carolina Press.
P. Auger, J.C. Poggiale
(1998), Aggregation and Emergence in Systems of Ordinary Differential
Equations, Mathematical Computer Modelling, 27, 4, pp. 1-22, (pdf).
J.C. Poggiale, J.Michalski,
R. Arditi (1998), Emergence of Donor
Control in
Patchy Predator-Prey Systems, Bulletin of Mathematical Biology,
60(6),
pp. 1149-1166, (pdf).
J.C. Poggiale, (1998),
Predator-Prey Models in Heterogeneous Environment :
Emergence of
Functional Response, Mathematical Computer Modelling, 27, 4,
pp. 63-71, (pdf).
J.C. Poggiale, (1998), Lotka-Volterra’s
Model and Migrations : breaking of the
well-known
center, Mathematical Computer Modelling,
27,
4, pp. 51-62, (pdf).
J.C. Poggiale, (1998), From Behavioural to
Population level : growth and
competition, Mathematical
Computer Modelling, 27, 4, pp. 41-50, (pdf).
B.W. Kooi,
J.C. Poggiale, P.M. Auger, (1998),
Aggregation
Methods in Food Chains, Mathematical Computer Modelling, 27, 4,
pp.
109-120, (pdf).
1997
J. Michalski,
J.C. Poggiale, R. Arditi,
P. Auger, (1997), Effects of migrations modes on patchy predator-prey
systems, Journal
of Theoretical Biology, 185, 459-474, (pdf).
F. François, J.C. Poggiale,
G. Stora, J.P. Durbec,
(1997), A new approach for the modelling of sediment reworking induced
by a macrobenthic community, ActaBiotheoretica
45, 295-319.
1996
P.
Auger, J.C. Poggiale, (1996), Reduction of complexity
and emergence in
hierarchically organized systems : population dynamics, Systems Analysis Modelling Simulation,
26, 217-237.
P. Auger, J.C. Poggiale,
(1996), Emergence of
Population Growth Models : Fast Migration and Slow
Growth, Journal
of Theoretical Biology 182, 99-108, (pdf).
J.C. Poggiale, P. Auger, (1996), Fast Oscillating
Migrations in a predator-prey model, Mathematical Models and
Methods in
Applied Sciences, Vol.6, 2, 217-226 , (pdf).
P. Auger, J.C. Poggiale,
(1996), Aggregation and Emergence in
Hierarchically Organized Systems :
Population
Dynamics, ActaBiotheoretica,
44, 301-316 (pdf)
1995
P. Auger, J.C. Poggiale,
(1995), Emerging
properties in population dynamics with different time scales, Journal
of
Biological Systems, Vol.3, 2, 591-602
J.C. Poggiale, P. Auger, R. Roussarie,
(1995), Perturbations of the Classical Lotka-Volterra
System by Behavioural Sequences, ActaBiotheoretica
43, 27-39